PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052293-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 413aa    MW: 45494.5 Da    PI: 5.6982
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052293-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-084252345
                      -HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwq 45
                      +W+ Ia++++ gRt++++k++w+
  PSME_00052293-RA  4 RWSQIAAHLP-GRTDNEIKNYWN 25
                      4*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.168132IPR017930Myb domain
SuperFamilySSF466891.87E-7335IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-12328IPR009057Homeodomain-like
PfamPF002492.9E-6426IPR001005SANT/Myb domain
CDDcd001673.14E-6425No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MISRWSQIAA HLPGRTDNEI KNYWNSSIKK KLMVKHDSAS FSTSPADGDT DRKPNFPFQS  60
NPNCNSDSMR PAAHVLDVVT SSQTAEPFLE VMPKENHLCA PGILELKQEQ AQNQNDQLLI  120
DPNPTNMNQQ LLIDANSSHT NECFSTHTDF ISPRLQAQGL HNYKAAKPST CRGLTLGSCR  180
STVPSHKVPG SSNNYSLGST GINIPALVES HSFKGKIEKD GQIIENQIMI DYSSFMSAGH  240
SYSNFAADIT DVYSGASYSN ELLGIATLED LVSVDHEKTA RQSCLPLNSM ALQVSTAPSI  300
SWVYNLDDED DRKDRLNLRY NEIPTYIESN SSRHKSYQIE GGRGIGHQLD CSRIFNQEAK  360
AKPIPAVFGG GNAPSEIHEC KGGAGQVTVW AQDDLYNINT AATSDYLDQI YFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.23e-12myb domain protein 26